Tag: genomics

AWS and the National Institutes of Health’s (NIH) National Center for Biotechnology Information (NCBI) announced the creation of the Coronavirus Genome Sequence Dataset to support COVID-19 research. The dataset is hosted by the AWS Open Data Sponsorship Program and accessible on the Registry of Open Data on AWS, providing researchers quick and easy access to coronavirus sequence data at no cost for use in their COVID-19 research.

In 2014, the Wall Lab at Stanford University sought to answer one of the most pressing questions in neuroscience: What genes influence autism spectrum disorder (ASD)? According to the Centers for Disease Control (CDC), this neurodevelopmental disorder affects roughly one in 54 children in America and is on the rise—nearly tripling since 1992. In the lab’s study of ASD genetics, they chose the cloud—and a unique experimental approach—to speed the time to science.

Academic medical centers (AMCs) are under pressure to reduce costs, innovate at scale, and improve operational performance. To do this, they’re turning to the cloud. Two AWS Partner Network (APN) Public Sector Partners used the cloud to create solutions for AMCs that use large datasets to help advance medical research and analyze genomic data. Learn how these two partners are building solutions in the cloud to help AMCs further their mission.

The botany department at the University of British Columbia (UBC) and the UBC Data Science Institute are working together to research the evolution and genetic makeup of sunflowers – a critical crop in addressing global food security.

The Centre for Genomic Pathogen Surveillance (CGPS) is based at the Wellcome Genome Campus, Cambridge and The Big Data Institute, University of Oxford in the United Kingdom. Much of its work involves collaborating with laboratories around the world to enhance genomic surveillance by using big data, engineering, training, and genomic capacity building. Ultimately, the Centre hopes to enable the linking and real-time interpretation of data globally to track pathogens and antimicrobial resistance at an affordable rate. Typically, spikes in cost for research are a common challenge for laboratories. With the cloud, the team wanted to mitigate their costs, and particularly those of their partners in low and middle-income countries, by exploring the Amazon Web Services (AWS) Cloud’s pay-as-you-go infrastructure.

September was monumental for the blog. Thanks to the continuous innovation of our customers, the blog topped 500 posts since launch! Here are the top September stories that helped us get there.

Cromwell is a workflow management system from Broad Institute of MIT and Harvard, a Cambridge, Massachusetts-based research institute that leverages the power of genomics to help us understand biology as well as treat human disease. Cromwell aims to facilitate scientific workflows for genome analysis. It enables genomic researchers, scientists, developers, and analysts to efficiently run their experiments, without deep expertise in computing capabilities. And it’s now on AWS.

Serverless architecture remains on the rise. From simple Alexa Skills to advanced web services, our customers’ use cases are innovative and diverse. Take Commonwealth Scientific and Industrial Research Organization (CSIRO)’s genomics research, for example. “AWS has become versatile and interoperable making it possible to set up complex research workflows as serverless web services,” says CSIRO’s Dr. Denis Bauer. Dr. Bauer and her team created a bioinformatics research tool, GT-Scan2, which Jeff Barr featured two years ago as one of the first examples of serverless architecture for compute-intensive tasks.

Hundreds of thousands of organizations around the world have joined AWS and many are using AWS solutions powered by Intel to build their businesses, scale their operations, and harness their technological innovations. We’re excited about our work with the hospitals and research institutions using bioinformatics to achieve major healthcare breakthroughs and unlock the mysteries of […]